totalro.blogg.se - Trinity Admin Addon 4.0.6

#TRINITY ADMIN ADDON 4.0.6 MANUAL#
#TRINITY ADMIN ADDON 4.0.6 SOFTWARE#

Pipeline for iterative, reference guided de novo genome assemblies Manual: /group/bioinfo/apps/apps/apache-ant-1.9.3/manual Includes PFAM and ClusterBlast 20170105_v8_31 databases Genome-wide analysis of gene clusters in bacterial and fungal genomes

antiSMASH (antibiotics and Secondary Metabolite Analysis SHell).

Next-generation sequencing data, Nucleic Acids Research, 38:e164, 2010 ANNOVAR: Functional annotation of genetic variants from Please cite ANNOVAR paper in your publication: Process NGS amplicon data from 454, Illumina, or Ion TorrentĮstimate ancestry and admixture time using sequence dataįunctionally annotate genetic variants detected from diverse genomes Info: /group/bioinfo/apps/apps/rdp_classifier_2.12/READMEĭocs: /group/bioinfo/apps/apps/rdp_classifier_2.12/docs/ Info in /group/bioinfo/apps/apps/amos-3.1.0/share/doc/

Probabilistically explore reconciled gene treesĪMOS (A Modular, Open-Source whole genome assembler)

Amalgamated likelihood estimation (ALE).

#TRINITY ADMIN ADDON 4.0.6 MANUAL#

Manual at /group/bioinfo/apps/apps/allpathslg-52488/share/doc/allpathslg/AllPaths-LG_Manual.pdf Info: /group/bioinfo/apps/apps/agrep-2.04/README Suite of tools to handle gene annotations in any GTF/GFF format Info probably in /group/bioinfo/apps/apps/abyss-samtobreak-1.3.7/share/doc/abyss This version is compiled with support for maximum k-mer size of 128Ĭalculate contig and scaffold contiguity and correctness metrics Use "man ABYSS" (also man pages for abyss-pe and abyss-tofastq) Info in /group/bioinfo/apps/apps/abyss-2.2.4-maxk128/share/doc/abyss This probably does not work when run from central location

#TRINITY ADMIN ADDON 4.0.6 SOFTWARE#

After that, you can use the module load command to access the software you want to useįor instance, module load blast will enable the NCBI BLAST software.Ĭontact the Bioinformatics Core Director if you want additional software installed.